If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ), 'gf_id' => 'HOM05D000698', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000698' ), 'data_identifier' => 'HOM05D000698', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000698', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13360' => 'bna', 'A01p20890' => 'bna', 'A02p25310' => 'bna', 'A03p25070' => 'bna', 'A03p34670' => 'bna', 'A03p44670' => 'bna', 'A03p49920' => 'bna', 'A03p53170' => 'bna', 'A03p67430' => 'bna', 'A04p33660' => 'bna', 'A04p33670' => 'bna', 'A05p33810' => 'bna', 'A05p41590' => 'bna', 'A05p41610' => 'bna', 'A07p23800' => 'bna', 'A08p12560' => 'bna', 'Aa31LG10G14930' => 'aar', 'Aa31LG1G26720' => 'aar', 'Aa31LG1G28430' => 'aar', 'Aa31LG2G12630' => 'aar', 'Aa31LG2G8890' => 'aar', 'Aa31LG5G16940' => 'aar', 'Aa31LG6G3930' => 'aar', 'Aa31LG8G11400' => 'aar', 'Aa31LG9G9760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1592' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2378' => 'aag', 'Actinidia02119' => 'ach', 'Actinidia05090' => 'ach', 'Actinidia05200' => 'ach', 'Actinidia05511' => 'ach', 'Actinidia06391' => 'ach', 'Actinidia11854' => 'ach', 'Actinidia12188' => 'ach', 'Actinidia18727' => 'ach', 'Actinidia21355' => 'ach', 'Actinidia22814' => 'ach', 'Actinidia24796' => 'ach', 'Actinidia26910' => 'ach', 'Actinidia35352' => 'ach', 'Ah.02g112630' => 'amhyb', 'Ah.06g185940' => 'amhyb', 'Ah.09g234840' => 'amhyb', 'Ah.12g056720' => 'amhyb', 'AL2G13870' => 'aly', 'AL3G17370' => 'aly', 'AL3G28200' => 'aly', 'AL3G43130' => 'aly', 'AL4G44290' => 'aly', 'AL5G42950' => 'aly', 'AL6G48090' => 'aly', 'AL7G31720' => 'aly', 'AL7G38430' => 'aly', 'Aqoxy1G02112' => 'aox', 'Aqoxy4G01828' => 'aox', 'Aqoxy5G02776' => 'aox', 'Aqoxy5G03911' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02DA49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0A7WSD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U9WS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SMT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQM6UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4CLSM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EXRI64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJA00B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDQ1YW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA8VII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBZ77J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JD54WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY21CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3Q019' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFW017' => 'arhy', 'AT1G62040' => 'ath', 'AT2G05630' => 'ath', 'AT2G45170' => 'ath', 'AT3G06420' => 'ath', 'AT3G15580' => 'ath', 'AT3G60640' => 'ath', 'AT4G04620' => 'ath', 'AT4G16520' => 'ath', 'AT4G21980' => 'ath', 'ATR0693G123' => 'atr', 'ATR0794G004' => 'atr', 'ATR0807G152' => 'atr', 'Atru.chr10.2235' => 'acertr', 'Atru.chr2.3450' => 'acertr', 'Atru.chr4.3130' => 'acertr', 'Atru.chr5.257' => 'acertr', 'Atru.chr5.903' => 'acertr', 'Atru.chr6.3191' => 'acertr', 'Atru.chr9.1338' => 'acertr', 'AUR62007501' => 'cqu', 'AUR62011733' => 'cqu', 'AUR62012715' => 'cqu', 'AUR62015788' => 'cqu', 'AUR62020428' => 'cqu', 'AUR62021940' => 'cqu', 'AUR62024566' => 'cqu', 'AUR62039955' => 'cqu', 'BcaB01g01823' => 'bca', 'BcaB01g03285' => 'bca', 'BcaB02g07562' => 'bca', 'BcaB03g15505' => 'bca', 'BcaB05g23721' => 'bca', 'BcaB06g29597' => 'bca', 'BcaB08g34506' => 'bca', 'BcaC01g03155' => 'bca', 'BcaC01g05153' => 'bca', 'BcaC02g10514' => 'bca', 'BcaC03g16240' => 'bca', 'BcaC04g21316' => 'bca', 'BcaC05g25814' => 'bca', 'BcaC05g28952' => 'bca', 'BcaC05g29816' => 'bca', 'BcaC05g30027' => 'bca', 'BcaC05g30028' => 'bca', 'BcaC06g31877' => 'bca', 'BcaC06g33487' => 'bca', 'BcaC07g37995' => 'bca', 'BcaC07g37996' => 'bca', 'BcaC08g44884' => 'bca', 'BcaC09g50362' => 'bca', 'BcaC09g51174' => 'bca', 'BcaNung00183' => 'bca', 'BcaNung00821' => 'bca', 'BcaNung01714' => 'bca', 'BcaNung02869' => 'bca', 'BcaNung05105' => 'bca', 'BolC1t01568H' => 'bol', 'BolC1t02566H' => 'bol', 'BolC3t15338H' => 'bol', 'BolC3t16495H' => 'bol', 'BolC3t17827H' => 'bol', 'BolC3t20560H' => 'bol', 'BolC3t20669H' => 'bol', 'BolC4t24348H' => 'bol', 'BolC5t34739H' => 'bol', 'BolC6t37653H' => 'bol', 'BolC7t45320H' => 'bol', 'BolC7t45652H' => 'bol', 'BolC8t48378H' => 'bol', 'BolC9t56156H' => 'bol', 'BraA01t01279Z' => 'bra', 'BraA01t02008Z' => 'bra', 'BraA03t11709Z' => 'bra', 'BraA03t12644Z' => 'bra', 'BraA03t13601Z' => 'bra', 'BraA03t14086Z' => 'bra', 'BraA03t14385Z' => 'bra', 'BraA04t18830Z' => 'bra', 'BraA05t22203Z' => 'bra', 'BraA05t22880Z' => 'bra', 'BraA07t30031Z' => 'bra', 'BraA08t33247Z' => 'bra', 'BraA09t38184Z' => 'bra', 'C01p16080' => 'bna', 'C01p26220' => 'bna', 'C03p29910' => 'bna', 'C03p42140' => 'bna', 'C03p55500' => 'bna', 'C03p82770' => 'bna', 'C04p28030' => 'bna', 'C04p71420' => 'bna', 'C05p50820' => 'bna', 'C05p60820' => 'bna', 'C06p25010' => 'bna', 'C07p47970' => 'bna', 'C07p51540' => 'bna', 'CAN.G100.28' => 'can', 'CAN.G1218.12' => 'can', 'CAN.G1227.12' => 'can', 'CAN.G337.142' => 'can', 'CAN.G404.61' => 'can', 'CAN.G569.4' => 'can', 'CANSAT01G2241' => 'cansat', 'CANSAT21G2610' => 'cansat', 'CANSAT56G1708' => 'cansat', 'CANSAT56G1971' => 'cansat', 'CANSAT64G1169' => 'cansat', 'CARHR050150' => 'chi', 'CARHR080950' => 'chi', 'CARHR090660' => 'chi', 'CARHR103290' => 'chi', 'CARHR140390' => 'chi', 'CARHR171040' => 'chi', 'CARHR222930' => 'chi', 'CARHR228790' => 'chi', 'CARHR252910' => 'chi', 'Carub.0002s0298' => 'cru', 'Carub.0003s0586' => 'cru', 'Carub.0003s1532' => 'cru', 'Carub.0003s2690' => 'cru', 'Carub.0004s2779' => 'cru', 'Carub.0005s2737' => 'cru', 'Carub.0006s3246' => 'cru', 'Carub.0007s1936' => 'cru', 'Carub.0007s2497' => 'cru', 'Ca_00665_v3' => 'car', 'Ca_01603_v3' => 'car', 'Ca_10249_v3' => 'car', 'Ca_21956_v3' => 'car', 'Ca_26472_v3' => 'car', 'CBR_g4422' => 'cbr', 'CBR_g51475' => 'cbr', 'Cc01_g21890' => 'ccan', 'Cc05_g04390' => 'ccan', 'Cc05_g13910' => 'ccan', 'Cc08_g12690' => 'ccan', 'Cc09_g01620' => 'ccan', 'CDE02G0565' => 'cde', 'CDE05G1158' => 'cde', 'CDE11G0549' => 'cde', 'CDE12G0922' => 'cde', 'Cfa004880' => 'cfa', 'Cfa005623' => 'cfa', 'Cfa011172' => 'cfa', 'Cfa012744' => 'cfa', 'Cfa014393' => 'cfa', 'Cfa014396' => 'cfa', 'Cfa015718' => 'cfa', 'Cfa020328' => 'cfa', 'Cfa025538' => 'cfa', 'Ciclev10006232m.g' => 'ccl', 'Ciclev10009926m.g' => 'ccl', 'Ciclev10017018m.g' => 'ccl', 'Ciclev10017176m.g' => 'ccl', 'Ciclev10022858m.g' => 'ccl', 'Ciclev10022874m.g' => 'ccl', 'Ciclev10022917m.g' => 'ccl', 'CiPaw.01G130700' => 'cil', 'CiPaw.04G115500' => 'cil', 'CiPaw.07G123500' => 'cil', 'CiPaw.10G071600' => 'cil', 'CiPaw.11G152500' => 'cil', 'CiPaw.11G191000' => 'cil', 'CiPaw.12G108700' => 'cil', 'CiPaw.12G130800' => 'cil', 'CiPaw.13G032800' => 'cil', 'CiPaw.14G026000' => 'cil', 'ClCG01G003980' => 'cla', 'ClCG01G021950' => 'cla', 'ClCG02G008810' => 'cla', 'ClCG03G004680' => 'cla', 'ClCG06G003100' => 'cla', 'ClCG09G004650' => 'cla', 'COL.COLO4_00343' => 'col', 'COL.COLO4_12494' => 'col', 'COL.COLO4_23157' => 'col', 'COL.COLO4_27724' => 'col', 'Cpa.g.sc12.293' => 'cpa', 'Cpa.g.sc152.20' => 'cpa', 'Cpa.g.sc49.158' => 'cpa', 'Cpa.g.sc67.78' => 'cpa', 'Cpa.g.sc87.80' => 'cpa', 'Cre16.g689650' => 'cre', 'CsaV3_1G010710' => 'csa', 'CsaV3_2G034910' => 'csa', 'CsaV3_5G004160' => 'csa', 'CsaV3_6G009210' => 'csa', 'CsaV3_6G049010' => 'csa', 'CsaV3_7G030480' => 'csa', 'CSS0008568' => 'camsi', 'CSS0012169' => 'camsi', 'CSS0013524' => 'camsi', 'CSS0022521' => 'camsi', 'CSS0023716' => 'camsi', 'CSS0027297' => 'camsi', 'CSS0028099' => 'camsi', 'CSS0028585' => 'camsi', 'CSS0029668' => 'camsi', 'CSS0031820' => 'camsi', 'CSS0033839' => 'camsi', 'CSS0035066' => 'camsi', 'CSS0035192' => 'camsi', 'CSS0047563' => 'camsi', 'CSS0049783' => 'camsi', 'DCAR_004914' => 'dca', 'DCAR_005728' => 'dca', 'DCAR_008483' => 'dca', 'DCAR_022570' => 'dca', 'DCAR_028196' => 'dca', 'Dinv05427' => 'din', 'Dinv12099' => 'din', 'Dinv13898' => 'din', 'Dinv20057' => 'din', 'Dinv21619' => 'din', 'Dinv22256' => 'din', 'Dinv39127' => 'din', 'Dinv40765' => 'din', 'Dinv43676' => 'din', 'Dinv44122' => 'din', 'Duzib068G0131' => 'dzi', 'Duzib084G1290' => 'dzi', 'Duzib133G1555' => 'dzi', 'Duzib138G1085' => 'dzi', 'Duzib138G1799' => 'dzi', 'Duzib192G0656' => 'dzi', 'Duzib205G0772' => 'dzi', 'Duzib235G1302' => 'dzi', 'Duzib248G1580' => 'dzi', 'Duzib251G0749' => 'dzi', 'ECA233G2267' => 'eca', 'ECA236G3399' => 'eca', 'ECA236G4995' => 'eca', 'ECA246G0864' => 'eca', 'ECA247G4118' => 'eca', 'EL10Ac2g02875' => 'bvu', 'EL10Ac4g07791' => 'bvu', 'EL10Ac5g11249' => 'bvu', 'EL10Ac5g11953' => 'bvu', 'EL10Ac5g13050' => 'bvu', 'EL10Ac6g14613' => 'bvu', 'EL10Ac8g19494' => 'bvu', 'EL10Ac8g19591' => 'bvu', 'EL10Ac8g20066' => 'bvu', 'EL10As5g23579' => 'bvu', 'Eucgr.D01326' => 'egr', 'Eucgr.D02047' => 'egr', 'Eucgr.E01502' => 'egr', 'Eucgr.E01504' => 'egr', 'Eucgr.E04051' => 'egr', 'Eucgr.F03474' => 'egr', 'Eucgr.H04111' => 'egr', 'Eucgr.K00590' => 'egr', 'Eucgr.K00796' => 'egr', 'Eucgr.L02487' => 'egr', 'FAN01G2074' => 'fan', 'FAN01G2420' => 'fan', 'FAN03G2317' => 'fan', 'FAN03G2992' => 'fan', 'FAN03G3323' => 'fan', 'FAN04G2327' => 'fan', 'FAN05G3493' => 'fan', 'FAN06G0032' => 'fan', 'FAN06G1375' => 'fan', 'FAN06G4144' => 'fan', 'FAN07G2574' => 'fan', 'FAN08G1081' => 'fan', 'FAN09G2304' => 'fan', 'FAN10G1068' => 'fan', 'FAN10G3123' => 'fan', 'FAN10G3433' => 'fan', 'FAN11G1866' => 'fan', 'FAN11G2957' => 'fan', 'FAN12G3935' => 'fan', 'FAN14G0198' => 'fan', 'FAN14G4418' => 'fan', 'FAN16G2353' => 'fan', 'FAN16G3449' => 'fan', 'FAN17G2299' => 'fan', 'FAN18G2570' => 'fan', 'FAN18G3844' => 'fan', 'FAN19G2473' => 'fan', 'FAN21G2095' => 'fan', 'FAN25G0001' => 'fan', 'FAN25G2011' => 'fan', 'FAN25G2078' => 'fan', 'FAN25G2162' => 'fan', 'FAN26G2931' => 'fan', 'FAN28G1960' => 'fan', 'FvH4_1g26480' => 'fve', 'FvH4_3g01980' => 'fve', 'FvH4_3g22920' => 'fve', 'FvH4_4g21320' => 'fve', 'FvH4_5g00060' => 'fve', 'FvH4_6g19421' => 'fve', 'FvH4_6g43130' => 'fve', 'FvH4_7g09231' => 'fve', 'FvH4_7g11130' => 'fve', 'Glyma.01G210200' => 'gma', 'Glyma.02G008800' => 'gma', 'Glyma.05G058300' => 'gma', 'Glyma.06G306300' => 'gma', 'Glyma.07G261000' => 'gma', 'Glyma.09G003900' => 'gma', 'Glyma.10G009300' => 'gma', 'Glyma.11G031800' => 'gma', 'Glyma.12G098400' => 'gma', 'Glyma.15G108200' => 'gma', 'Glyma.17G013000' => 'gma', 'Glyma.17G140700' => 'gma', 'Gohir.A02G057500' => 'ghi', 'Gohir.A03G008800' => 'ghi', 'Gohir.A05G170800' => 'ghi', 'Gohir.A08G030300' => 'ghi', 'Gohir.A08G136700' => 'ghi', 'Gohir.A09G068800' => 'ghi', 'Gohir.A09G195900' => 'ghi', 'Gohir.A10G012500' => 'ghi', 'Gohir.A11G106500' => 'ghi', 'Gohir.A12G157700' => 'ghi', 'Gohir.D02G063300' => 'ghi', 'Gohir.D03G162100' => 'ghi', 'Gohir.D05G173800' => 'ghi', 'Gohir.D08G041200' => 'ghi', 'Gohir.D08G157400' => 'ghi', 'Gohir.D09G068600' => 'ghi', 'Gohir.D09G190500' => 'ghi', 'Gohir.D10G012000' => 'ghi', 'Gohir.D11G111400' => 'ghi', 'Gohir.D12G160600' => 'ghi', 'Gohir.D13G088900' => 'ghi', 'Gorai.003G170600' => 'gra', 'Gorai.004G040200' => 'gra', 'Gorai.004G163700' => 'gra', 'Gorai.005G071200' => 'gra', 'Gorai.006G082800' => 'gra', 'Gorai.006G213100' => 'gra', 'Gorai.007G119300' => 'gra', 'Gorai.008G173600' => 'gra', 'Gorai.009G179100' => 'gra', 'Gorai.011G013500' => 'gra', 'Gorai.013G101500' => 'gra', 'GSVIVG01001307001' => 'vvi', 'GSVIVG01012719001' => 'vvi', 'GSVIVG01027638001' => 'vvi', 'GSVIVG01028202001' => 'vvi', 'GSVIVG01030430001' => 'vvi', 'GSVIVG01037666001' => 'vvi', 'HanXRQChr03g0088111' => 'han', 'HanXRQChr05g0129481' => 'han', 'HanXRQChr05g0159521' => 'han', 'HanXRQChr08g0233431' => 'han', 'HanXRQChr10g0285611' => 'han', 'HanXRQChr11g0337311' => 'han', 'HanXRQChr13g0396341' => 'han', 'HanXRQChr15g0464401' => 'han', 'HanXRQChr17g0549781' => 'han', 'Haze_00794' => 'cav', 'Haze_05119' => 'cav', 'Haze_06806' => 'cav', 'Haze_07885' => 'cav', 'Haze_09695' => 'cav', 'Haze_26103' => 'cav', 'Haze_26418' => 'cav', 'Hma1.2p1_0025F.1_g016210' => 'hma', 'Hma1.2p1_0025F.1_g016220' => 'hma', 'Hma1.2p1_0036F.1_g023560' => 'hma', 'Hma1.2p1_0091F.1_g046440' => 'hma', 'Hma1.2p1_0328F.1_g126970' => 'hma', 'Hma1.2p1_0408F.1_g146390' => 'hma', 'Hma1.2p1_0673F.1_g201450' => 'hma', 'Hma1.2p1_0675F.1_g201890' => 'hma', 'Hma1.2p1_0749F.1_g212620' => 'hma', 'Hma1.2p1_0916F.1_g236510' => 'hma', 'HPP92_011148' => 'vpl', 'HPP92_012814' => 'vpl', 'HPP92_014480' => 'vpl', 'HPP92_016291' => 'vpl', 'HPP92_016310' => 'vpl', 'HPP92_016514' => 'vpl', 'HPP92_027191' => 'vpl', 'HPP92_027637' => 'vpl', 'Hund01984' => 'sun', 'Hund09693' => 'sun', 'Hund11589' => 'sun', 'Hund14583' => 'sun', 'Hund21412' => 'sun', 'Hund23235' => 'sun', 'Lalb_Chr02g0147021' => 'lal', 'Lalb_Chr03g0028721' => 'lal', 'Lalb_Chr05g0225751' => 'lal', 'Lalb_Chr07g0181791' => 'lal', 'Lalb_Chr12g0196071' => 'lal', 'Lalb_Chr13g0304231' => 'lal', 'Lalb_Chr14g0375811' => 'lal', 'Lalb_Chr15g0087641' => 'lal', 'Lalb_Chr18g0056401' => 'lal', 'Lalb_Chr18g0056411' => 'lal', 'Lalb_Chr19g0135921' => 'lal', 'Lalb_Chr20g0118681' => 'lal', 'Lalb_Chr20g0118691' => 'lal', 'Lalb_Chr21g0309781' => 'lal', 'Lalb_Chr24g0393211' => 'lal', 'Lj3g0000434' => 'lja', 'Lj3g0012535' => 'lja', 'Lj4g0000464' => 'lja', 'Lj4g0009206' => 'lja', 'Lj5g0024068' => 'lja', 'Lj6g0002314' => 'lja', 'Lj8A170G74' => 'lonja', 'Lsat_1_v5_gn_1_69041' => 'lsa', 'Lsat_1_v5_gn_4_45540' => 'lsa', 'Lsat_1_v5_gn_5_101220' => 'lsa', 'Lsat_1_v5_gn_5_3700' => 'lsa', 'Lsat_1_v5_gn_6_3081' => 'lsa', 'Lsat_1_v5_gn_7_109861' => 'lsa', 'Lsat_1_v5_gn_7_16200' => 'lsa', 'Lsat_1_v5_gn_9_6500' => 'lsa', 'Manes.01G233100' => 'mes', 'Manes.01G268900' => 'mes', 'Manes.02G038300' => 'mes', 'Manes.03G130800' => 'mes', 'Manes.05G010700' => 'mes', 'Manes.15G070700' => 'mes', 'Manes.15G070800' => 'mes', 'Manes.16G006500' => 'mes', 'Manes.17G026600' => 'mes', 'Mapoly0001s0494' => 'mpo', 'Mapoly0027s0034' => 'mpo', 'MBI02_g21888_MAGBIO' => 'mbi', 'MBI04_g03672_MAGBIO' => 'mbi', 'MBI04_g41912_MAGBIO' => 'mbi', 'MBI18_g06099_MAGBIO' => 'mbi', 'MBI18_g09621_MAGBIO' => 'mbi', 'MCO06G269' => 'mco', 'MD00G1034000' => 'mdo', 'MD00G1114800' => 'mdo', 'MD02G1111500' => 'mdo', 'MD02G1210100' => 'mdo', 'MD03G1126000' => 'mdo', 'MD03G1126400' => 'mdo', 'MD03G1199200' => 'mdo', 'MD04G1095300' => 'mdo', 'MD04G1095400' => 'mdo', 'MD05G1345400' => 'mdo', 'MD05G1347700' => 'mdo', 'MD06G1061100' => 'mdo', 'MD07G1116100' => 'mdo', 'MD09G1264900' => 'mdo', 'MD09G1293100' => 'mdo', 'MD10G1300700' => 'mdo', 'MD10G1319000' => 'mdo', 'MD10G1319100' => 'mdo', 'MD10G1322100' => 'mdo', 'MD11G1216100' => 'mdo', 'MD12G1152200' => 'mdo', 'MD13G1141800' => 'mdo', 'MD13G1142000' => 'mdo', 'MD13G1142400' => 'mdo', 'MD14G1045100' => 'mdo', 'MD15G1229100' => 'mdo', 'MD16G1138400' => 'mdo', 'MD16G1251800' => 'mdo', 'MD17G1097800' => 'mdo', 'Medtr1g086310' => 'mtr', 'Medtr2g023430' => 'mtr', 'Medtr2g088230' => 'mtr', 'Medtr4g037225' => 'mtr', 'Medtr4g048510' => 'mtr', 'Medtr4g101090' => 'mtr', 'Medtr4g123760' => 'mtr', 'Medtr7g096540' => 'mtr', 'MELO3C002452.2' => 'cme', 'MELO3C005538.2' => 'cme', 'MELO3C007393.2' => 'cme', 'MELO3C019271.2' => 'cme', 'MELO3C019757.2' => 'cme', 'MELO3C021148.2' => 'cme', 'MELO3C023607.2' => 'cme', 'MELO3C029058.2' => 'cme', 'MELO3C035561.2' => 'cme', 'Migut.D00027' => 'egut', 'Migut.E00847' => 'egut', 'Migut.E01664' => 'egut', 'Migut.H01818' => 'egut', 'Migut.M01748' => 'egut', 'Migut.M01760' => 'egut', 'MSTRG.12981' => 'ama', 'MSTRG.14438' => 'ama', 'MSTRG.15141' => 'ama', 'MSTRG.15991' => 'ama', 'MSTRG.18065' => 'ama', 'MSTRG.1944' => 'ama', 'MSTRG.6928' => 'ama', 'MSTRG.7206' => 'ama', 'Nitab4.5_0000312g0190' => 'nta', 'Nitab4.5_0000712g0240' => 'nta', 'Nitab4.5_0000900g0020' => 'nta', 'Nitab4.5_0001393g0160' => 'nta', 'Nitab4.5_0002225g0080' => 'nta', 'Nitab4.5_0002287g0100' => 'nta', 'Nitab4.5_0002827g0070' => 'nta', 'Nitab4.5_0002994g0040' => 'nta', 'Nitab4.5_0004341g0010' => 'nta', 'Nitab4.5_0004829g0010' => 'nta', 'Nitab4.5_0005074g0040' => 'nta', 'Nitab4.5_0007864g0040' => 'nta', 'Nitab4.5_0007864g0080' => 'nta', 'Nitab4.5_0010270g0010' => 'nta', 'Nn002s41365' => 'nnu', 'Nn1g01047' => 'nnu', 'Nn1g07146' => 'nnu', 'Nn3g21883' => 'nnu', 'Nn6g33995' => 'nnu', 'Oeu002742.2' => 'oeu', 'Oeu013631.2' => 'oeu', 'Oeu017016.1' => 'oeu', 'Oeu034034.1' => 'oeu', 'Oeu038064.1' => 'oeu', 'Oeu041821.1' => 'oeu', 'Oeu062586.1' => 'oeu', 'Os04g0624000' => 'osa', 'Os07g0512200' => 'osa', 'Os08g0191600' => 'osa', 'Peaxi162Scf00002g01616' => 'pax', 'Peaxi162Scf00102g01135' => 'pax', 'Peaxi162Scf00189g01210' => 'pax', 'Peaxi162Scf00235g00323' => 'pax', 'Peaxi162Scf00306g00059' => 'pax', 'Peaxi162Scf00919g00044' => 'pax', 'Peaxi162Scf01204g00119' => 'pax', 'PGR004G0850' => 'pgr', 'PGR004G1940' => 'pgr', 'PGR031G1819' => 'pgr', 'PGR083G2211' => 'pgr', 'PGR142G1068' => 'pgr', 'PGR142G2029' => 'pgr', 'PGSC0003DMG400004802' => 'stu', 'PGSC0003DMG400005075' => 'stu', 'PGSC0003DMG400005198' => 'stu', 'PGSC0003DMG400014422' => 'stu', 'PGSC0003DMG400016479' => 'stu', 'PGSC0003DMG402012477' => 'stu', 'PGSC0003DMG402022314' => 'stu', 'Phvul.002G062200' => 'pvu', 'Phvul.003G079300' => 'pvu', 'Phvul.003G219600' => 'pvu', 'Phvul.006G149640' => 'pvu', 'Phvul.007G210800' => 'pvu', 'Phvul.011G103300' => 'pvu', 'Potri.001G122700' => 'ptr', 'Potri.002G144600' => 'ptr', 'Potri.002G189450' => 'ptr', 'Potri.002G228800' => 'ptr', 'Potri.003G110901' => 'ptr', 'Potri.004G013700' => 'ptr', 'Potri.008G099400' => 'ptr', 'Potri.008G136040' => 'ptr', 'Potri.010G153400' => 'ptr', 'Potri.011G004300' => 'ptr', 'Potri.014G060300' => 'ptr', 'Potri.014G153800' => 'ptr', 'Pp3c14_15040' => 'ppa', 'Pp3c14_15110' => 'ppa', 'Pp3c14_15140' => 'ppa', 'Pp3c14_15141' => 'ppa', 'Pp3c17_5780' => 'ppa', 'Pp3c1_32170' => 'ppa', 'Pp3c1_32190' => 'ppa', 'PRCOL_00001921' => 'pco', 'Prupe.1G107100' => 'ppe', 'Prupe.3G004300' => 'ppe', 'Prupe.3G216800' => 'ppe', 'Prupe.4G019800' => 'ppe', 'Prupe.4G019900' => 'ppe', 'Prupe.4G020200' => 'ppe', 'Prupe.4G020400' => 'ppe', 'Prupe.4G050000' => 'ppe', 'Prupe.4G215300' => 'ppe', 'Prupe.4G283600' => 'ppe', 'Prupe.5G072400' => 'ppe', 'Prupe.8G006200' => 'ppe', 'Psat1g180080' => 'psa', 'Psat4g070200' => 'psa', 'Psat5g263600' => 'psa', 'Psat6g160480' => 'psa', 'Psat7g198200' => 'psa', 'PSO063G6495' => 'pso', 'PSO210G1819' => 'pso', 'PSO210G6134' => 'pso', 'PSO541G6043' => 'pso', 'PSO675G0065' => 'pso', 'PSO761G0357' => 'pso', 'PSO782G1975' => 'pso', 'PSO832G2968' => 'pso', 'QL04p038882' => 'qlo', 'QL05p073035' => 'qlo', 'QL06p013856' => 'qlo', 'QL07p008208' => 'qlo', 'QL08p033000' => 'qlo', 'QL12p012667' => 'qlo', 'QL12p034336' => 'qlo', 'QL93p1872_0023' => 'qlo', 'RcHm_v2.0_Chr1g0349151' => 'rch', 'RcHm_v2.0_Chr2g0159191' => 'rch', 'RcHm_v2.0_Chr3g0474721' => 'rch', 'RcHm_v2.0_Chr3g0486541' => 'rch', 'RcHm_v2.0_Chr4g0427091' => 'rch', 'RcHm_v2.0_Chr5g0002891' => 'rch', 'RcHm_v2.0_Chr5g0040231' => 'rch', 'RcHm_v2.0_Chr7g0202901' => 'rch', 'Rhsim02G0106700' => 'rsi', 'Rhsim06G0218400' => 'rsi', 'Rhsim07G0030800' => 'rsi', 'Rhsim07G0106600' => 'rsi', 'Rhsim07G0107200' => 'rsi', 'Rhsim13G0000800' => 'rsi', 'Rhsim13G0153400' => 'rsi', 'RhsimUnG0249400' => 'rsi', 'Sabra02G0112400' => 'sbr', 'Sabra04G0006500' => 'sbr', 'Sabra08G0075100' => 'sbr', 'Sabra10G0118000' => 'sbr', 'Sabra11G0003400' => 'sbr', 'Sabra14G0044200' => 'sbr', 'SalBow6G1221' => 'sbo', 'SalBow8G3254' => 'sbo', 'Sc03g0008540' => 'sci', 'Sc07g0009350' => 'sci', 'Sc12g0002280' => 'sci', 'Sc17g0000150' => 'sci', 'Sc17g0007410' => 'sci', 'Sc21g0001410' => 'sci', 'Sed0000951' => 'sed', 'Sed0005445' => 'sed', 'Sed0005935' => 'sed', 'Sed0006457' => 'sed', 'Sed0007896' => 'sed', 'Sed0009992' => 'sed', 'Sed0010885' => 'sed', 'Sed0016583' => 'sed', 'Sed0018811' => 'sed', 'Sed0024486' => 'sed', 'SEGI_09003' => 'sgi', 'SEGI_18189' => 'sgi', 'SGA_v2.0_scaffold18G08545' => 'sas', 'SGA_v2.0_scaffold4G01910' => 'sas', 'SGA_v2.0_scaffold7G03832' => 'sas', 'SGA_v2.0_scaffold80G25691' => 'sas', 'SGA_v2.0_scaffold8G04326' => 'sas', 'SMO165G0065' => 'smo', 'SMO201G0147' => 'smo', 'SMO356G0366' => 'smo', 'Solyc01g068060.4' => 'sly', 'Solyc07g064680.3' => 'sly', 'Solyc08g078820.3' => 'sly', 'Solyc10g006270.4' => 'sly', 'Sopen01g029990' => 'spe', 'Sopen02g025290' => 'spe', 'Sopen03g005510' => 'spe', 'Sopen07g032880' => 'spe', 'Sopen08g003350' => 'spe', 'Sopen08g027280' => 'spe', 'Sopen10g002220' => 'spe', 'Sp2g02520' => 'spa', 'Sp3g05340' => 'spa', 'Sp3g13860' => 'spa', 'Sp3g24090' => 'spa', 'Sp4g27220' => 'spa', 'Sp5g02600' => 'spa', 'Sp6g04260' => 'spa', 'Sp7g15090' => 'spa', 'Sp7g20170' => 'spa', 'SpUn0031_0100' => 'spa', 'TAR365G0781' => 'tar', 'TAR365G0920' => 'tar', 'TAR374G0125' => 'tar', 'TAR375G0485' => 'tar', 'TAR624G1102' => 'tar', 'TAR626G0371' => 'tar', 'TAR627G0344' => 'tar', 'TAR629G2679' => 'tar', 'THA.LOC104802130' => 'tha', 'THA.LOC104802466' => 'tha', 'THA.LOC104808874' => 'tha', 'THA.LOC104812779' => 'tha', 'THA.LOC104812971' => 'tha', 'THA.LOC104813143' => 'tha', 'THA.LOC104818791' => 'tha', 'THA.LOC104818853' => 'tha', 'THA.LOC104826601' => 'tha', 'Thecc.01G322500' => 'tca', 'Thecc.01G382200' => 'tca', 'Thecc.02G315700' => 'tca', 'Thecc.03G253800' => 'tca', 'Thecc.06G221600' => 'tca', 'Thhalv10006314m.g' => 'esa', 'Thhalv10009130m.g' => 'esa', 'Thhalv10021784m.g' => 'esa', 'Thhalv10021792m.g' => 'esa', 'Thhalv10023763m.g' => 'esa', 'Thhalv10026531m.g' => 'esa', 'Thhalv10026582m.g' => 'esa', 'Thhalv10027158m.g' => 'esa', 'Thhalv10029077m.g' => 'esa', 'TPR.G12706' => 'tpr', 'TPR.G3024' => 'tpr', 'TPR.G37673' => 'tpr', 'TPR.G4176' => 'tpr', 'TPR.G4643' => 'tpr', 'TPR.G7084' => 'tpr', 'TWI14G1266' => 'twi', 'TWI23G0116' => 'twi', 'TWI23G0756' => 'twi', 'TWI36G0710' => 'twi', 'TWI38G1799' => 'twi', 'TWI53G1795' => 'twi', 'TWI60G0198' => 'twi', 'TWI63G0504' => 'twi', 'TWI75G0927' => 'twi', 'TWI81G0865' => 'twi', 'unitig_0.g745' => 'ugi', 'unitig_578.g16641' => 'ugi', 'unitig_62.g23286' => 'ugi', 'unitig_748.g7587' => 'ugi', 'unitig_85.g27328' => 'ugi', 'vmacro02228' => 'vma', 'vmacro02369' => 'vma', 'vmacro09703' => 'vma', 'vmacro13438' => 'vma', 'vmacro14090' => 'vma', 'vmacro15808' => 'vma', 'vmacro23212' => 'vma', 'VMungo0251G1344' => 'vmu', 'VMungo0540G2285' => 'vmu', 'VMungo0720G0583' => 'vmu', 'VMungo1127G0398' => 'vmu', 'VMungo1215G0140' => 'vmu', 'VMungo1215G1635' => 'vmu', 'Zm00001eb070240' => 'zma', 'Zm00001eb105850' => 'zma', 'Zm00001eb171400' => 'zma', 'Zm00001eb413320' => 'zma', 'Zm00001eb431210' => 'zma' ) $gf_id = 'HOM05D000698' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000698' ) $data_identifier = 'HOM05D000698' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 34, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 1, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 29, 'mtr' => (int) 8, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 12, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 10, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431210' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1